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Two-state folding over a weak free-energy barrier

Författare:
Publiceringsår: 2003
Språk: Engelska
Sidor: 1457-1465
Publikation/Tidskrift/Serie: Biophysical Journal
Volym: 85
Nummer: 3
Dokumenttyp: Artikel
Förlag: Biophysical Society

Sammanfattning

We present a Monte Carlo study of a model protein with 54 amino acids that folds directly to its native three-helix-bundle state without forming any well-defined intermediate state. The free-energy barrier separating the native and unfolded states of this protein is found to be weak, even at the folding temperature. Nevertheless, we find that melting curves to a good approximation can be described in terms of a simple two-state system, and that the relaxation behavior is close to single exponential. The motion along individual reaction coordinates is roughly diffusive on timescales beyond the reconfiguration time for a single helix. A simple estimate based on diffusion in a square-well potential predicts the relaxation time within a factor of two.

Disputation

Nyckelord

  • Physics and Astronomy
  • Chemistry

Övriga

Published
Yes
  • ISSN: 0006-3495
  • ISSN: 1542-0086

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